2024 – 4 publication
68. Mavridou, D., Psatha, K., Aivaliotis, M., Integrative Analysis of Multi-Omics Data to Identify Deregulated Molecular Pathways and Druggable Targets in Chronic Lymphocytic Leukemia, J. Pers. Med. (2024), 14(8), 831; https://doi.org/10.3390/jpm14080831 IF 3.000
67. G. Orfanoudaki, K. Psatha, M. Aivaliotis, Insight into Mantle Cell Lymphoma Pathobiology, Diagnosis, and Treatment Using Network-Based and Drug-Repurposing Approaches, Int J Mol Sci. (2024) Jul; 25(13): 7298 IF 4,900
66. Papakonstantinou Ε., Dragoumani K., Mataragka A., Bacopoulou F., Yapijakis C., Balatsos N.A.A., Pissaridi K., Ladikos D., Eftymiadou A., Katsaros G., Gikas E., Hatzis P., Samiotaki M., Aivaliotis M., Megalooikonomou V., Giannakakis A., Iliopoulos C., Bongcam-Rudloff E., Kossida S., Eliopoulos E., Chrousos G.P., Vlachakis D., Fingerprinting Breast Milk; insights into Milk Exosomics, EMBnet. journal (2024) 29: e1048 IF 0,400
2023 – 4 publication
65. Kourti M., Aivaliotis M., Hatzipantelis E., Proteomics in Childhood Acute Lymphoblastic Leukemia: Challenges and Opportunities, Diagnostics (2024) 13(17), 2748; https://doi.org/10.3390/diagnostics13172748 IF 3,600
64. Psatha K., Kollipara L., Drakos E., Deligianni E., Brintakis K., Patsouris E., Sickmann A., Rassidakis G.Z., Aivaliotis M., Interruption of p53-MDM2 Interaction by Nutlin-3a in Human Lymphoma Cell Models Initiates a Cell-Dependent Global Effect on Transcriptome and Proteome Level, Cancers (2023) Jul 31;15(15):3903 doi: 10.3390/cancers15153903 IF 5,200
63. Kountourantzis A., Minoudi S., Karaiskou N., Papakostas S., Moulistanos A., Baka R.D., Tsartsianidou V., Vlachavas A., Aivaliotis M., Polizopoulou Z.S., Triantafyllidis A., Prevalence of SOD1 allele associated with degenerative myelopathy in canine population in Greece, Research in Veterinary Science (2023) Volume 162, September, 104959 IF 2,400
62. Devranis P., Vassilopoulou Ε., Tsironis V., Sotiriadis P.M., Chourdakis M., Aivaliotis M., Tsolaki M., Mediterranean Diet, Ketogenic Diet or MIND Diet for Aging Populations with Cognitive Decline: A Systematic Review, Life (2023) 13 (1), 173 IF 3.253
2022 – 2 publications
61. Papagiannopoulos C.I., Kyritsis K.A, Psatha K., Mavridou D., Chatzopoulou F., Aivaliotis, M., Vizirianakis I.S., Invariable ribosome stoichiometry during murine erythroid differentiation: implications for understanding ribosomopathies, Frontiers in Molecular Biosciences (2022) IF 4.615
60. Katsara, K., Psatha, K., Kenanakis G., Aivaliotis, M., Papadakis V.M., Subtyping on live lymphoma cell lines by Raman spectroscopy, Materials (2022) IF 3.623
2021 – 2 publications
59. Mavridou, D., Psatha, K., Aivaliotis, M., Proteomics and drug repurposing in CLL towards precision medicine, Cancers (2021) 13(14), 3391, doi.org/10.3390/cancers13143391 IF 6.639
58. L.P.N. Giassafaki, S. Siqueira, E. Panteris, K. Psatha, F. Chatzopoulou, M. Aivaliotis, G. Tzimagiorgis, A. Müllertz, D.G. Fatouros, I.S. Vizirianakis, Towards analyzing the potential of exosomes to deliver microRNA therapeutics, Journal of Cellular Physiology (2021) 04 August , doi.org/10.1002/jcp.29991 IF 5.546
2020 – 4 publications
57. C. Karakosta, A. Tzamalis, M. Aivaliotis, I. Tsinopoulos, Pathogenesis of Age-related Cataract: a systematic review of proteomic studies, Current Proteomics (2020) DOI : 10.2174/1570164617999201020205100 IF 0.680
56. E. Goulielmaki, A. Ioannidou, M. Tsekrekou, K. Stratigi, I.K. Poutakidou, K. Gkirtzimanaki, M. Aivaliotis, K. Evangelou, P. Topalis, J. Altmüller, V.G. Gorgoulis, G. Chatzinikolaou, G.A. Garinis, Tissue-infiltrating macrophages mediate an exosome-based metabolic reprogramming upon DNA damage, Nature Communication (2020) 11, Article number: 42 IF 12.121
55. M.G. Grammatikopoulou, K. Gkiouras, A.G. Markaki, K.K. Gkouskou, M. Aivaliotis, K. Stylianou, D.P. Bogdanos, AMY1 diploid copy number among end-stage renal disease patients. Hormones (2020) volume 19, pages 369–376 IF 1.962
54. T. Theodosiou, N. Papanikolaou, M. Savvaki, G. Bonetto, S. Maxouri, E. Fakoureli, A.G. Eliopoulos, N. Tavernarakis, G.D. Amoutzias, G.A. Pavlopoulos, M. Aivaliotis, V. Nikoletopoulou, D. Tzamarias, D, Karagogeos, I. Iliopoulos, UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network. NAR Genomics and Bioinformatics (2020) Volume 2, Issue 1, March 2020, lqaa005 IF 11.501
2019 – 7 publications
53. A. Chasapi, M. Aivaliotis, L. Angelis, A. Chanalaris, I. Iliopoulos, I. Kappas, C. Karapiperis, N.C. Kyrpides, E. Pafilis, E. Panteris, P. Topalis, G. Tsiamis, I.S. Vizirianakis, M. Vlassi, V.J. Promponas, C.A. Ouzounis, Establishment of computational biology in Greece and Cyprus: Past, present, and future., PLoS Comput Biol. 2019 Dec 19;15(12):e1007532. doi: 10.1371/journal.pcbi.1007532 IF 4.428
52. M. Vlassi, K.A Kyritsis, I.S Vizirianakis, T. Giannakouros, M. Aivaliotis, E. Nikolakaki, Data on the expression of SRPK1a in mammals, Data in brief (2019) Volume 25, August 2019, 104210 IF 0.970
51. V. Balabanidou, M. Kefi, M. Aivaliotis, V. Koidou, J.R. Girotti, S.J. Mijailovsky, M.P. Juárez, E. Papadogiorgaki, G. Chalepakis, A. Kampouraki, C. Nikolaou, H. Ranson, J. Vontas, Mosquitoes cloak their legs to resist insecticides. Proceedings of the Royal Society B (2019) Volume 286, 1907, 17 July doi: 10.1098/rspb.2019.1091 IF 4.304
50. E. Bouras, M. Karakioulaki, K.I. Bougioukas, M. Aivaliotis, G. Tzimagiorgis, M. Chourdakis, Gene promoter methylation and cancer: An umbrella review. GENE (2019) Volume 710, 20 August 2019, Pages 333-340 IF 3.688
49. C. Seitanidou, G. Orfanoudaki, D. Mavridou, A. Pitsikali, E. Drakos, K. Psatha, M. Aivaliotis, Dissecting human lymphoma using an integrated network analysis. Aristotle Biomedical Journal (2019) Vol 1, No 1, pages 96-101
48. A. Kalantidou, A.A. Karkavitsa, G. Orfanoudaki, D. Mavridou, A. Pitsikali, L. Kollipara, A. Sickmann, G. Rassidakis, E. Drakos, K. Psatha, M. Aivaliotis, Deciphering the role of autophagy and exosomes in human lymphoma. Aristotle Biomedical Journal (2019) Vol 1, No 1, pages 102-107
47. K. Chalkiadaki, A. Veli, E. Kyriazidis, V. Stavroulaki, V. Vouvoutsi, E. Chatzaki, M. Aivaliotis, K. Sidiropoulou, Development of the MAM model of schizophrenia in mice: Sex similarities and differences of hippocampal and prefrontal cortical function. Neuropharmacology (2019) Jan;144:193-207. doi: 10.1016/j.neuropharm.2018.10.026. Epub 2018 Oct 24 IF 5.250
2018 – 2 publications
46. S.N. Charova , A.D. Gazi, E. Mylonas, C. Pozidis, B. Sabarit, D. Anagnostou, K. Psatha, M. Aivaliotis, C.R. Beuzon, N.J. Panopoulos, M. Kokkinidis, Migration of type III secretion system transcriptional regulators links gene expression to secretion. mBio (2018) 9:e01096-18. https://doi.org/10.1128/mBio.01096-18
45. K. Chalkiadaki, A. Veli, E. Kyriazidis, V. Stavroulaki, V. Vouvoutsi, E. Chatzaki, M. Aivaliotis, K. Sidiropoulou, Development of the MAM model of schizophrenia mice: Sex similarities and differences of prefrontal cortical and hippocampus function, bioRxiv (2018) April 18. https://doi.org/10.1101/295741
2017 – 5 publications
44. G. Efstathiou, A.N. Antonakis, G.A. Pavlopoulos, T. Theodosiou, P. Divanach, D.C. Trudgian, B. Thomas, N. Papanikolaou, M. Aivaliotis, O. Acuto, I. Iliopoulos, ProteoSign: an end-user online differential proteomics statistical analysis platform Nucleic Acids Res. (2017) May 17. doi: 10.1093/nar/gkx444 IF 11.501
43. G. Chatzinikolaou, Z. Apostolou, T. Aid-Pavlidis, A. Ioannidou, I. Karakasilioti, G. Papadopoulos, M. Aivaliotis, M. Tsekrekou, J. Strouboulis, T. Kosteas, G. Garinis, “DNA damage Triggers Aberrant Developmental Silencing of Imprinted Genes” Nature Cell Biology (2017) doi:10.1038/ncb3499
42. V.E. Fadouloglou, S. Balomenou, M. Aivaliotis, S. Arnaouteli, G. Efstathiou, N. Kountourakis, A. Tsalafouta, S. Miliara, A. Tomasidou, M. Gioulbasani, D. Kotsifaki, N.M. Glykos, V. Bouriotis, M. Kokkinidis, “An unusual proline hydroxylation promotes active-site maturation” Journal of the American Chemical Society (2017) March 2017, DOI: 10.1021/jacs.6b12209 (equal first author contribution)
41. K. Kalyvianaki, V. Gebhart, N. Peroulis, C. Panagiotopoulou, F. Kiagiadaki, I. Pediaditakis, M. Aivaliotis, E. Moustou, M. Tzardi, G. Notas, E. Castanas, M. Kampa, “OXER1 mediates the rapid effects of androgens acting as a specific membrane receptor in prostate cancer” Scientific Reports (2017) 7:44418 March 2017
40. K. Psatha, L. Kollipara, C. Voutyraki, P.J.G. Divanach, A. Sickmann, G.Z. Rassidakis, E. Drakos, M. Aivaliotis, “Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics” Journal of Chromatography B (2017) Volume 1047, 15 March, Pages 2–14
2016 – 1 publication
39. M. Papanastasiou, G. Orfanoudaki, N. Kountourakis, M. Koukaki, M.F. Sardis, M. Aivaliotis, K.C. Tsolis, S. Karamanou, A. Economou, “Rapid label-free quantitative analysis of the E. coli BL21 (DE3) inner membrane proteome”, Proteomics (2016) Jan;16(1):85-97
2015 – 5 publications
38. N. Tzenaki, M. Aivaliotis, E.A. Papakonstanti, “Focal adhesion kinase phosphorylates the phosphatase and tensin homolog deleted on chromosome 10 under the control of p110δ phosphoinositide-3 kinase”, FASEB J. (2015) Dec;29(12):4840-52
37. K. Stratigi, M. Kapsetaki, M. Aivaliotis, T. Town, R.A. Flavell, C.G. Spilianakis “Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression”, (2015) PNAS vol. 112 no. 13 E1577-E1586
36. R. Gessmann, H. Brückner, M. Aivaliotis, K. Petratos, “The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu”, (2015) J Pept Sci. 2015 Jun;21(6):476-9
35. A.D Gazi, S. Charova, M. Aivaliotis, N.J. Panopoulos, M. Kokkinidis, “HrpG and HrpV proteins from the Type III secretion system of Erwinia amylovora form a stable heterodimer”, (2015) FEMS Microbiology Letters, 362, 1–8
34. K. Bakela, N. Kountourakis, M. Aivaliotis, I. Athanassakis, “Soluble MHC-II proteins promote suppressive activity in CD4+ T cells”, Immunology, (2015) 144, 158–169
2014 – 1 publication
33. K Bakela, N Kountourakis, M Aivaliotis, I Athanassakis, “Soluble MHC CLASS II Antigens as Potent Regulators of the Immune Response”, Journal of Clinical Immunology (2014), 34, S170-S170
2013 – 2 publications
32. P Tzerpos, T Savvidis, M Aivaliotis, P Benos, C Spilianakis, “Bioinformatic and proteomic analysis of transcription factor binding sites in interacting regulatory elements in mouse T cells”, The Febs Journal (2013), 280 (1), 20
31. M. Papanastasiou, G. Orfanoudaki, M. Koukaki, N. Kountourakis, M. F. Sardis, M. Aivaliotis, S. Karamanou and A. Economou, “The Escherichia coli Inner Membrane Peripherome”, Molecular and Cellular Proteomics (2013) Dec 12, 3, 599-610
2012 – 2 publications
30. M. Schlesner, A. Miller, H. Besir, M. Aivaliotis, J. Streif, B. Scheffer, F. Siedler, D. Oesterhelt, “The Protein Interaction Network of a Taxis Signal Transduction System in a Halophilic Archaeon”, BMC Microbiology (2012) Nov 21;12(1):272
29. P. G Zerefos, M. Aivaliotis, M. Baumann, A. Vlahou, “Analysis of the urine proteome via a combination of multi-dimensional approaches” Proteomics (2012) 12, 391
2011 – 2 publications
28. EA Mylona, MA Savelonas, D Maroulis, M Aivaliotis, “2D-GE image segmentation based on level-sets”, Image Processing (ICIP) (2011) 18th IEEE International Conference on, 2141-2144
27. E. A. Kapellios, S. Karamanou, M. F. Sardis, M. Aivaliotis, A. Economou and S. A. Pergantis, “Using nanoelectrospray ion mobility spectrometry (GEMMA) to determine the size and relative molecular mass of proteins and protein assemblies: a comparison with MALLS and QELS”, Analytical and Bioanalytical Chemistry (2011) (14 January 2011), pp. 1-13.
2010 – 4 publications
26. E. Lionaki, M. Aivaliotis, C. Pozidis, K. Tokatlidis, “The N-terminal shuttle domain of Erv1 determines the affinity for Mia40 and mediates electron transfer to the catalytic Erv1 core in yeast mitochondria”, Antioxid Redox Signal. (2010) Apr 1. https://doi.org/10.1089/ars.2010.3200
25. K. Kouyianou, M. Aivaliotis, K. Gevaert, M. Karas, G. Tsiotis, “Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods”, Photosynth Res. (2010) Mar 27, 104: 153. https://doi.org/10.1007/s11120-010-9544-x
24. G. Samoilis, M. Aivaliotis, I. Vranakis, A. Papadioti, Y. Tselentis, G. Tsiotis, A. Psaroulaki, “Proteomic screening for possible effector molecules secreted by the obligate intracellular pathogen Coxiella burnetii”, J Proteome Res. (2010) Jan 1. https://doi.org/10.1002/prca.200900189
23. H. Mischak, W. Kolch, M. Aivaliotis, D. Bouyssié, M. Court, H. Dihazi, G. H. Dihazi, J. Franke, J. Garin, A. Gonzalez de Peredo, A. Iphöfer, L. Jänsch, C. Lacroix, M. Makridakis, C. Masselon, J. Metzger, B. Monsarrat, M. Mrug, M. Norling, J. Novak, A. Pich, A. Pitt, E. Bongcam-Rudloff, J. Siwy, H. Suzuki, V. Thongboonkerd, L.-S. Wang, J. Zoidakis, P. Zürbig, J. P. Schanstra, and A. Vlahou, “Comprehensive human urine standards for comparability and standardization in clinical proteome analysis” Proteomics Clinical applications (2010) 4 (4): 464–478
2009 – 2 publications
22. A. Tebbe, A. Schmidt, K. Konstantinidis, M. Falb, B. Bisle, C. Klein, M. Aivaliotis, J. Kellermann, F. Siedler, F. Pfeiffer, F. Lottspeich and D. Oesterhelt, “Life-Style changes of a Halophilic Archaeon analyzed by Quantitative Proteomics” Proteomics (2009) Aug; 9 (15): 3843-55
21. M. Aivaliotis, B. Macek, F. Gnad, P. Reichelt, M. Mann and D. Oesterhelt, “Ser/Thr/Tyr protein phosphorylation in archaea, the third domain of life” PLoS ONE (2009), 4(3):e4777. https://doi.org/10.1371/journal.pone.0004777 (Corresponding author)
2007 – 5 publications
20. K. Katzilakis, M. Aivaliotis, C. Kotakis, F. Krasanakis, A. K. Rizos, K. Kotzabasis and G. Tsiotis, “A comparative approach towards thylakoid membrane proteome analysis of unicellular green alga Scenedesmus obliquus” Biochim Biophys Acta (2007) May 13; [Epub ahead of print]
19. M. Aivaliotis, K. Gevaert, M. Falb, A. Tebbe, K. Konstantinidis, B. Bisle, C. Klein, L. Martens, A. Staes, E. Timmerman, J. Van Damme, F. Siedler, F. Pfeiffer, J. Vandekerckhove and D. Oesterhelt, “Large scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis” J. Prot. Res. (2007), 6, 6, 2195-204.
18. M. Aivaliotis, M. Karas and G. Tsiotis, “An alternative strategy for the membrane proteome analysis of the green sulfur bacterium Chlorobium tepidum using Blue Native PAGE and 2-D PAGE on purified membranes” J. Prot. Res. (2007), 6, 3, 1048-1058.
17. C. Klein, M. Aivaliotis, J. V. Olsen, M. Falb, H. Besir, B. Scheffer, B. Bisle, A. Tebbe, K. Konstantinidis, F. Siedler, F. Pfeiffer, M. Mann and D. Oesterhelt, “The low molecular weight proteome of Halobacterium salinarum” J. Prot. Res. (2007), 6 (4), 1510-1518.
16. K. Konstantinidis, A. Tebbe, C. Klein, B. Scheffer, M. Aivaliotis, B. Bisle, M. Falb, F. Pfeiffer, F. Siedler and D. Oesterhelt, “Genome-wide proteomics of Natronomonas pharaonis” J. Prot. Res. (2007), 1, 185-193.
2006 – 7 publications
15. M. Falb, M. Aivaliotis, C. Garcia-Rizo, B. Bisle, A. Tebbe, C. Klein, K. Konstantinidis, F. Siedler, F. Pfeiffer, D. Oesterhelt, “Archaeal N-terminal protein maturation commonly involves N-acetylation: a large-scale proteomics survey” J. Mol. Biol. (2006) 362, 915-924
14. C Klein, M Aivaliotis, J van Olsen, M Falb, H Besir, Beatrix Scheffer, B Bisle, A Tebbe, K Konstantinidis, F Siedler, F Pfeiffer, M Mann, D Oesterhelt, “Proteome analysis of low molecular weight proteins in Halobacterium salinarum“, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S232-S232
13. M Schlesner, H Besir, B Scheffer, M Aivaliotis, D OesterheltAnalysis of protein-protein interactions in Halobacterium salinarum, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S238-S238
12. M Aivaliotis, G Damsma, M Schlesner, K Konstantinidis, F Siedler, F Pfeiffer, D Oesterhelt, “Study of arginine fermentation in Halobacterium salinarum using quantitative proteomics”, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S234-S234
11. M. Aivaliotis, M., Karas, G. Tsiotis, “High throughput two-dimensional blue-native electrophoresis: a tool for functional proteomics of cytoplasmatic protein complexes from Chlorobium tepidum”, Photosynth Res. (2006) 88 (2), 143-57
10. M. Aivaliotis, M., Haase, W., Karas, G. Tsiotis, “Proteomic analysis of chlorosome-depleted membranes of the green sulfur bacterium Chlorobium tepidum”, Proteomics, (2006) 6, 1, 217-232.
9. E. Tsirogianni, M. Aivaliotis, D.G. Papasotiriou, M. Karas & G. Tsiotis, “Identification of inducible protein complexes in the phenol degrader Pseudomonas sp. strain phDV1 by blue native gel electrophoresis and mass spectrometry”, Amino Acids, (2006) 30, 1, 63-72
2005 – 2 publications
8. M Aivaliotis, A Tebbe, F Siedler, F Pfeiffer, D Oesterhelt, “Analysis of protein phosphorylation in Halobacterium salinarum“. Molecular & Cellular Proteomics 4 (2005) (8), S273-S273
7. I. Tsirogianni, M. Aivaliotis, M. Karas & G. Tsiotis, “Detection and characterization of catechol 2,3-dioxygenase in an indigenous soil Pseudomonad by MALDI-TOF MS using a column separation”, Biodegradation, (2005) 16, 181-186
2004 – 4 publications
6. M. Aivaliotis, C. Corvey, I. Tsirogianni, M. Karas & G. Tsiotis, “Membrane proteome analysis of the green sulfur bacterium Chlorobium tepidum”, Electrophoresis, (2004) 25, 3468-3474
5. I. Tsirogianni, M. Aivaliotis, M. Karas & G. Tsiotis, “Mass spectrometric mapping of the enzymes involved in the phenol degradation of an indigenous soil pseudomonad”, Biochim Biophys Acta. (2004) 1700 (1), 117-123
4. I. Tsirogianni, M. Aivaliotis, & G. Tsiotis, “Protein and lipid composition of a vitellin isolated from eggs of Sparus aurata”, Z. Naturforsch. (2004) 59c, 132-134
3. M. Aivaliotis, E. Neofotistou, H-W., Rémigy, G. Tsimpinos, A. Lustig, F. Lottspeich, & G. Tsiotis, “Isolation and characterization of an outer membrane protein of Chlorobium tepidum’’, Photosynth. Res. (2004) 79 (2), 161-166
2003 – 2 publications
2. H-W. Rémigy, M. Aivaliotis, N. Ioannidis, P. Jenö, T. Mini, A. Engel, M. Jaquinod, & G. Tsiotis, “Characterization by mass spectroscopy of a 10 kDa c-554 cytochrome from the green sulfur bacterium Chlorobium tepidum”, Photosynth. Res. (2003) 78(2), 153-160
1. M. Aivaliotis, P. Samolis, E. Neofotistou, H-W. Rémigy, A.K. Rizos, & G. Tsiotis, “Molecular size determination of a membrane protein in surfactants by light scattering”, Biochim Biophys Acta. (2003) 1615 (1-2), 69-76
