Publications

2019 – 4 publication

50. E. Bouras, M. Karakioulaki, K.I. Bougioukas, M. Aivaliotis, G. Tzimagiorgis, M. Chourdakis, Gene promoter methylation and cancer: An umbrella review. GENE (2019) Volume 710, 20 August 2019, Pages 333-340

49. C. Seitanidou, G. Orfanoudaki, D. Mavridou, A. Pitsikali, E. Drakos, K. Psatha, M. Aivaliotis, Dissecting human lymphoma using an integrated network analysis. Aristotle Biomedical Journal (2019) Vol 1, No 1, pages 96-101

48. A. Kalantidou, A.A. Karkavitsa, G. Orfanoudaki, D. Mavridou, A. Pitsikali, L. Kollipara, A. Sickmann, G. Rassidakis, E. Drakos, K. Psatha, M. Aivaliotis, Deciphering the role of autophagy and exosomes in human lymphoma. Aristotle Biomedical Journal (2019) Vol 1, No 1, pages 102-107

47. K. Chalkiadaki, A. Veli, E. Kyriazidis, V. Stavroulaki, V. Vouvoutsi, E. Chatzaki, M. Aivaliotis, K. Sidiropoulou, Development of the MAM model of schizophrenia in mice: Sex similarities and differences of hippocampal and prefrontal cortical function. Neuropharmacology (2019) Jan;144:193-207. doi: 10.1016/j.neuropharm.2018.10.026. Epub 2018 Oct 24


2018 – 2 publications

46.  S.N. Charova , A.D. Gazi, E. Mylonas, C. Pozidis, B. Sabarit, D. Anagnostou, K. Psatha, M. Aivaliotis, C.R. Beuzon, N.J. Panopoulos, M. Kokkinidis, Migration of type III secretion system transcriptional regulators links gene expression to secretion. mBio (2018) 9:e01096-18. https://doi.org/10.1128/mBio.01096-18

45. K. Chalkiadaki, A. Veli, E. Kyriazidis, V. Stavroulaki, V. Vouvoutsi, E. Chatzaki, M. Aivaliotis, K. Sidiropoulou, Development of the MAM model of schizophrenia mice: Sex similarities and differences of prefrontal cortical and hippocampus function, bioRxiv (2018) April 18. 


2017 – 5 publications

44. G. Efstathiou, A.N. Antonakis, G.A. Pavlopoulos, T. Theodosiou, P. Divanach, D.C. Trudgian, B. Thomas, N. Papanikolaou, M. Aivaliotis, O. Acuto, I. Iliopoulos, ProteoSign: an end-user online differential proteomics statistical analysis platform Nucleic Acids Res. (2017) May 17. doi: 10.1093/nar/gkx444

43. G. Chatzinikolaou, Z. Apostolou, T. Aid-Pavlidis, A. Ioannidou, I. Karakasilioti, G. Papadopoulos, M. Aivaliotis, M. Tsekrekou, J. Strouboulis, T. Kosteas, G. Garinis, “DNA damage Triggers Aberrant Developmental Silencing of Imprinted Genes” Nature Cell Biology (2017) doi:10.1038/ncb3499

42. V.E. Fadouloglou, S. Balomenou, M. Aivaliotis, S. Arnaouteli, G. Efstathiou, N. Kountourakis, A. Tsalafouta, S. Miliara, A. Tomasidou, M. Gioulbasani, D. Kotsifaki, N.M. Glykos, V. Bouriotis, M. Kokkinidis, “An unusual proline hydroxylation promotes active-site maturation” Journal of the American Chemical Society (2017) March 2017, DOI: 10.1021/jacs.6b12209 (equal first author contribution)

41. K. Kalyvianaki, V. Gebhart, N. Peroulis, C. Panagiotopoulou, F. Kiagiadaki, I. Pediaditakis, M. Aivaliotis, E. Moustou, M. Tzardi, G. Notas, E. Castanas, M. Kampa, “OXER1 mediates the rapid effects of androgens acting as a specific membrane receptor in prostate cancer” Scientific Reports (2017) 7:44418 March 2017

40. K. Psatha, L. Kollipara, C. Voutyraki, P.J.G. Divanach, A. Sickmann, G.Z. Rassidakis, E. Drakos, M. Aivaliotis, “Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics” Journal of Chromatography B (2017) Volume 1047, 15 March, Pages 2–14


2016 – 1 publication

39. M. Papanastasiou, G. Orfanoudaki, N. Kountourakis, M. Koukaki, M.F. Sardis, M. Aivaliotis, K.C. Tsolis, S. Karamanou, A. Economou, “Rapid label-free quantitative analysis of the E. coli BL21 (DE3) inner membrane proteome”, Proteomics (2016) Jan;16(1):85-97


2015 – 5 publications

38. N. Tzenaki, M. Aivaliotis, E.A. Papakonstanti, “Focal adhesion kinase phosphorylates the phosphatase and tensin homolog deleted on chromosome 10 under the control of p110δ phosphoinositide-3 kinase”, FASEB J. (2015) Dec;29(12):4840-52

37. K. Stratigi, M. Kapsetaki, M. Aivaliotis, T. Town, R.A. Flavell, C.G. Spilianakis “Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression”, (2015) PNAS vol. 112 no. 13 E1577-E1586

36. R. Gessmann, H. Brückner, M. Aivaliotis, K. Petratos, “The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu”, (2015) J Pept Sci. 2015 Jun;21(6):476-9

35. A.D Gazi, S. Charova, M. Aivaliotis, N.J. Panopoulos, M. Kokkinidis, “HrpG and HrpV proteins from the Type III secretion system of Erwinia amylovora form a stable heterodimer”, (2015) FEMS Microbiology Letters, 362, 1–8

34. K. Bakela, N. Kountourakis, M. Aivaliotis, I. Athanassakis, “Soluble MHC-II proteins promote suppressive activity in CD4+ T cells”, Immunology, (2015) 144, 158–169


2014 – 1 publication

33. K Bakela, N Kountourakis, M Aivaliotis, I Athanassakis, “Soluble MHC CLASS II Antigens as Potent Regulators of the Immune Response”, Journal of Clinical Immunology (2014),  34, S170-S170


2013 – 2 publications

32. P Tzerpos, T Savvidis, M Aivaliotis, P Benos, C Spilianakis, “Bioinformatic and proteomic analysis of transcription factor binding sites in interacting regulatory elements in mouse T cells”, The Febs Journal (2013), 280 (1), 20

31. M. Papanastasiou, G. Orfanoudaki, M. Koukaki, N. Kountourakis, M. F. Sardis, M. Aivaliotis, S. Karamanou and A. Economou, “The Escherichia coli Inner Membrane Peripherome”, Molecular and Cellular Proteomics (2013) Dec 12, 3, 599-610


2012 – 2 publications

30. M. Schlesner, A. Miller, H. Besir, M. Aivaliotis, J. Streif, B. Scheffer, F. Siedler, D. Oesterhelt,  “The Protein Interaction Network of a Taxis Signal Transduction System in a Halophilic Archaeon”, BMC Microbiology (2012) Nov 21;12(1):272

29. P. G Zerefos, M. Aivaliotis, M. Baumann, A. Vlahou, “Analysis of the urine proteome via a combination of multi-dimensional approaches” Proteomics (2012) 12, 391


2011 – 2 publications

28. EA Mylona, MA Savelonas, D Maroulis, M Aivaliotis, “2D-GE image segmentation based on level-sets”, Image Processing (ICIP) (2011) 18th IEEE International Conference on, 2141-2144

27. E. A. Kapellios, S. Karamanou, M. F. Sardis, M. Aivaliotis, A. Economou and S. A. Pergantis, “Using nanoelectrospray ion mobility spectrometry (GEMMA) to determine the size and relative molecular mass of proteins and protein assemblies: a comparison with MALLS and QELS”, Analytical and Bioanalytical Chemistry (2011) (14 January 2011), pp. 1-13.


2010 – 4 publications

26. E. Lionaki, M. Aivaliotis, C. Pozidis, K. Tokatlidis, “The N-terminal shuttle domain of Erv1 determines the affinity for Mia40 and mediates electron transfer to the catalytic Erv1 core in yeast mitochondria”, Antioxid Redox Signal. (2010) Apr 1. https://doi.org/10.1089/ars.2010.3200

25. K. Kouyianou, M. Aivaliotis, K. Gevaert, M. Karas, G. Tsiotis, “Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods”, Photosynth Res. (2010) Mar 27, 104: 153. https://doi.org/10.1007/s11120-010-9544-x

24. G. Samoilis, M. Aivaliotis, I. Vranakis, A. Papadioti, Y. Tselentis, G. Tsiotis, A. Psaroulaki, “Proteomic screening for possible effector molecules secreted by the obligate intracellular pathogen Coxiella burnetii”, J Proteome Res. (2010) Jan 1. https://doi.org/10.1002/prca.200900189

23. H. Mischak, W. Kolch, M. Aivaliotis, D. Bouyssié, M. Court, H. Dihazi, G. H. Dihazi, J. Franke, J. Garin, A. Gonzalez de Peredo, A. Iphöfer, L. Jänsch, C. Lacroix, M. Makridakis, C. Masselon, J. Metzger, B. Monsarrat, M. Mrug, M. Norling, J. Novak, A. Pich, A. Pitt, E. Bongcam-Rudloff, J. Siwy, H. Suzuki, V. Thongboonkerd, L.-S. Wang, J. Zoidakis, P. Zürbig, J. P. Schanstra, and A. Vlahou, “Comprehensive human urine standards for comparability and standardization in clinical proteome analysis” Proteomics Clinical applications (2010) 4 (4): 464–478


2009 – 2 publications

22. A. Tebbe, A. Schmidt, K. Konstantinidis, M. Falb, B. Bisle, C. Klein, M. Aivaliotis, J. Kellermann, F. Siedler, F. Pfeiffer, F. Lottspeich and D. Oesterhelt, “Life-Style changes of a Halophilic Archaeon analyzed by Quantitative Proteomics” Proteomics (2009) Aug; 9 (15): 3843-55

21. M. Aivaliotis, B. Macek, F. Gnad, P. Reichelt, M. Mann and D. Oesterhelt, “Ser/Thr/Tyr protein phosphorylation in archaea, the third domain of life” PLoS ONE (2009), 4(3):e4777. https://doi.org/10.1371/journal.pone.0004777 (Corresponding author)


2007 – 5 publications

20. K. Katzilakis, M. Aivaliotis, C. Kotakis, F. Krasanakis, A. K. Rizos, K. Kotzabasis and G. Tsiotis, “A comparative approach towards thylakoid membrane proteome analysis of unicellular green alga Scenedesmus obliquusBiochim Biophys Acta (2007) May 13; [Epub ahead of print]

19. M. Aivaliotis, K. Gevaert, M. Falb, A. Tebbe, K. Konstantinidis, B. Bisle, C. Klein, L. Martens, A. Staes, E. Timmerman, J. Van Damme, F. Siedler, F. Pfeiffer, J. Vandekerckhove and D. Oesterhelt, “Large scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonisJ. Prot. Res. (2007), 6, 6, 2195-204.

18. M. Aivaliotis, M. Karas and G. Tsiotis, “An alternative strategy for the membrane proteome analysis of the green sulfur bacterium Chlorobium tepidum using Blue Native PAGE and 2-D PAGE on purified membranes” J. Prot. Res. (2007), 6, 3, 1048-1058.

17. C. Klein, M. Aivaliotis, J. V. Olsen, M. Falb, H. Besir, B. Scheffer, B. Bisle, A. Tebbe, K. Konstantinidis, F. Siedler, F. Pfeiffer, M. Mann and D. Oesterhelt, “The low molecular weight proteome of Halobacterium salinarumJ. Prot. Res. (2007), 6 (4), 1510-1518.

16. K. Konstantinidis, A. Tebbe, C. Klein, B. Scheffer, M. Aivaliotis, B. Bisle, M. Falb, F. Pfeiffer, F. Siedler and D. Oesterhelt, “Genome-wide proteomics of Natronomonas pharaonisJ. Prot. Res. (2007), 1, 185-193.


2006 – 7 publications

15. M. Falb, M. Aivaliotis, C. Garcia-Rizo, B. Bisle, A. Tebbe, C. Klein, K. Konstantinidis, F. Siedler, F. Pfeiffer, D. Oesterhelt, “Archaeal N-terminal protein maturation commonly involves N-acetylation: a large-scale proteomics survey” J. Mol. Biol. (2006) 362, 915-924

14. C Klein, M Aivaliotis, J van Olsen, M Falb, H Besir, Beatrix Scheffer, B Bisle, A Tebbe, K Konstantinidis, F Siedler, F Pfeiffer, M Mann, D Oesterhelt, “Proteome analysis of low molecular weight proteins in Halobacterium salinarum“, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S232-S232

13. M Schlesner, H Besir, B Scheffer, M Aivaliotis, D OesterheltAnalysis of protein-protein interactions in Halobacterium salinarum, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S238-S238

12. M Aivaliotis, G Damsma, M Schlesner, K Konstantinidis, F Siedler, F Pfeiffer, D Oesterhelt, “Study of arginine fermentation in Halobacterium salinarum using quantitative proteomics”, Molecular & Cellular Proteomics 5 (2006), (10 Suppl. Suppl. S), S234-S234

11. M. Aivaliotis, M., Karas, G. Tsiotis, “High throughput two-dimensional blue-native electrophoresis: a tool for functional proteomics of cytoplasmatic protein complexes from Chlorobium tepidum”, Photosynth Res. (2006) 88 (2), 143-57

10. M. Aivaliotis, M., Haase, W., Karas, G. Tsiotis, “Proteomic analysis of chlorosome-depleted membranes of the green sulfur bacterium Chlorobium tepidum”, Proteomics, (2006) 6, 1, 217-232.

9. E. Tsirogianni, M. Aivaliotis, D.G. Papasotiriou, M. Karas & G. Tsiotis, “Identification of inducible protein complexes in the phenol degrader Pseudomonas sp. strain phDV1 by blue native gel electrophoresis and mass spectrometry”, Amino Acids, (2006) 30, 1, 63-72


2005 – 2 publications

8. M Aivaliotis, A Tebbe, F Siedler, F Pfeiffer, D Oesterhelt, “Analysis of protein phosphorylation in Halobacterium salinarum“. Molecular & Cellular Proteomics 4 (2005) (8), S273-S273

7. I. Tsirogianni, M. Aivaliotis, M. Karas & G. Tsiotis, “Detection and characterization of catechol 2,3-dioxygenase in an indigenous soil Pseudomonad by MALDI-TOF MS using a column separation”, Biodegradation, (2005) 16, 181-186


2004 – 4 publications

6. M. Aivaliotis, C. Corvey, I. Tsirogianni, M. Karas & G. Tsiotis, “Membrane proteome analysis of the green sulfur bacterium Chlorobium tepidum”, Electrophoresis, (2004) 25, 3468-3474

5. I. Tsirogianni, M. Aivaliotis, M. Karas & G. Tsiotis, “Mass spectrometric mapping of the enzymes involved in the phenol degradation of an indigenous soil pseudomonad”, Biochim Biophys Acta. (2004) 1700 (1), 117-123

4. I. Tsirogianni, M. Aivaliotis, & G. Tsiotis, “Protein and lipid composition of a vitellin isolated from eggs of Sparus aurata”, Z. Naturforsch. (2004) 59c, 132-134

3. M. Aivaliotis, E. Neofotistou, H-W., Rémigy, G. Tsimpinos, A. Lustig, F. Lottspeich, & G. Tsiotis, “Isolation and characterization of an outer membrane protein of Chlorobium tepidum’’, Photosynth. Res. (2004) 79 (2), 161-166


2003 – 2 publications

2. H-W. Rémigy, M. Aivaliotis, N. Ioannidis, P. Jenö, T. Mini, A. Engel, M. Jaquinod, & G. Tsiotis, “Characterization by mass spectroscopy of a 10 kDa c-554 cytochrome from the green sulfur bacterium Chlorobium tepidum”, Photosynth. Res. (2003) 78(2), 153-160

1. M. Aivaliotis, P. Samolis, E. Neofotistou, H-W. Rémigy, A.K. Rizos, & G. Tsiotis, “Molecular size determination of a membrane protein in surfactants by light scattering”, Biochim Biophys Acta. (2003) 1615 (1-2), 69-76